SubtiBank SubtiBank
yfkH [2018-07-31 10:40:08]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yfkH [2018-07-31 10:40:08]

general stress protein, survival of ethanol and paraquat stresses
locus
BSU07900
pI
8.42
mw
30.32 kDa
protein length
275 aa Sequence Blast
gene length
825 bp Sequence Blast
function
survival of stress conditions
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.8|Resistance against oxidative and electrophile stress]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    862,836 → 863,663

    The protein

    Structure

  • membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|2CEFD8D9692D062CC09E3DEDA1A4015C76BC4167|yfkJ]-[gene|A38D85EE1BCCA5E5E77CAF9583E7D052BB7F8188|yfkI]-[gene|0A9352AB10C7DC06BF477EBE384D6E21D920AAC8|yfkH]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|11532142], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528,11532142], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

    • regulation

  • induced by stress ([protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]) [Pubmed|15805528,11532142]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-C268 (yfkH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2266 NBRP B. subtilis, Japan]
  • BKE07900 (Δ[gene|0A9352AB10C7DC06BF477EBE384D6E21D920AAC8|yfkH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07900 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCGTCTCACCTCGCAT, downstream forward: _UP4_TAGCGCACCCTATAAACGAA
  • BKK07900 (Δ[gene|0A9352AB10C7DC06BF477EBE384D6E21D920AAC8|yfkH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07900 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCGTCTCACCTCGCAT, downstream forward: _UP4_TAGCGCACCCTATAAACGAA

    • References

  • 15805528,11532142,22582280